CVS commit: pkgsrc/biology/gromacs

["Thomas Klausner" <wiz%netbsd.org@localhost>]

Module Name:    pkgsrc
Committed By:   wiz
Date:           Sun Jan  4 00:03:57 UTC 2026

Modified Files:
        pkgsrc/biology/gromacs: distinfo
Added Files:
        pkgsrc/biology/gromacs/patches: patch-src_mdlib_pme.c

Log Message:
gromacs: fix build on NetBSD-current


To generate a diff of this commit:
cvs rdiff -u -r1.13 -r1.14 pkgsrc/biology/gromacs/distinfo
cvs rdiff -u -r0 -r1.1 pkgsrc/biology/gromacs/patches/patch-src_mdlib_pme.c

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

Modified files:

Index: pkgsrc/biology/gromacs/distinfo
diff -u pkgsrc/biology/gromacs/distinfo:1.13 pkgsrc/biology/gromacs/distinfo:1.14
--- pkgsrc/biology/gromacs/distinfo:1.13        Tue Oct 26 10:03:40 2021
+++ pkgsrc/biology/gromacs/distinfo     Sun Jan  4 00:03:56 2026
@@ -1,4 +1,4 @@
-$NetBSD: distinfo,v 1.13 2021/10/26 10:03:40 nia Exp $
+$NetBSD: distinfo,v 1.14 2026/01/04 00:03:56 wiz Exp $
 
 BLAKE2s (gromacs-4.5.5.tar.gz) = 5ea20182772ed1db559f752007db1716eb2a6bbeccbce1703d741be89d5c675e
 SHA512 (gromacs-4.5.5.tar.gz) = 8af0b81261a6b08c461275bccc4e72d23efd664ed5af12e3579956b5822ab6c6eea2ccbfbfe6ea1f4b30403a3c1367f52638e281cd1d7bc49e9220332c3e2b8c
@@ -10,3 +10,4 @@ SHA1 (patch-ag) = 810d58d3ad787c9508f775
 SHA1 (patch-ah) = 36ceeb409e59d8d3f0abe3bfa3ea3108f61f7a8e
 SHA1 (patch-ai) = ed4aa71eb56d1300c67cd17057f72ea452739f3d
 SHA1 (patch-aj) = 080d2923d729ff00de0f2cae75a82ec6c3769d6c
+SHA1 (patch-src_mdlib_pme.c) = 9cf4c7b47f0583c49ef387d89ab09463f3fde208

Added files:

Index: pkgsrc/biology/gromacs/patches/patch-src_mdlib_pme.c
diff -u /dev/null pkgsrc/biology/gromacs/patches/patch-src_mdlib_pme.c:1.1
--- /dev/null   Sun Jan  4 00:03:57 2026
+++ pkgsrc/biology/gromacs/patches/patch-src_mdlib_pme.c        Sun Jan  4 00:03:57 2026
@@ -0,0 +1,24 @@
+$NetBSD: patch-src_mdlib_pme.c,v 1.1 2026/01/04 00:03:57 wiz Exp $
+
+Use proper type.
+
+--- src/mdlib/pme.c.orig       2026-01-04 00:01:45.206745929 +0000
++++ src/mdlib/pme.c
+@@ -2082,7 +2082,7 @@ int gmx_pme_init(gmx_pme_t *         pme
+         {
+ #ifdef GMX_MPI
+             pme->mpi_comm_d[0] = pme->mpi_comm;
+-            pme->mpi_comm_d[1] = NULL;
++            pme->mpi_comm_d[1] = 0;
+ #endif
+             pme->ndecompdim = 1;
+             pme->nodeid_major = pme->nodeid;
+@@ -2092,7 +2092,7 @@ int gmx_pme_init(gmx_pme_t *         pme
+         else if (nnodes_major == 1)
+         {
+ #ifdef GMX_MPI
+-            pme->mpi_comm_d[0] = NULL;
++            pme->mpi_comm_d[0] = 0;
+             pme->mpi_comm_d[1] = pme->mpi_comm;
+ #endif
+             pme->ndecompdim = 1;