(math/R) Partly fix the problem of 4.4.3 on NetBSD/9.3

[Makoto Fujiwara (via pkgsrc-wip) <commit-notify%pkgsrc.org@localhost>]

Module Name:	pkgsrc-wip
Committed By:	Makoto Fujiwara <makoto%if.t.u-tokyo.ac.jp@localhost>
Pushed By:	mef
Date:		Fri Jan 2 20:29:07 2026 +0900
Changeset:	19714d56a0d7dfd8dd825b62c98241854ee1a376

Modified Files:
	R/TODO
	R/distinfo
Added Files:
	R/patches/patch-configure.ac

Log Message:
(math/R) Partly fix the problem of 4.4.3 on NetBSD/9.3

To see a diff of this commit:
https://wip.pkgsrc.org/cgi-bin/gitweb.cgi?p=pkgsrc-wip.git;a=commitdiff;h=19714d56a0d7dfd8dd825b62c98241854ee1a376

Please note that diffs are not public domain; they are subject to the
copyright notices on the relevant files.

diffstat:
 R/TODO                       | 24 ++++++++++++++++++++++++
 R/distinfo                   |  3 +--
 R/patches/patch-configure.ac | 33 +++++++++++++++++++++++++++++++++
 3 files changed, 58 insertions(+), 2 deletions(-)

diffs:
diff --git a/R/TODO b/R/TODO
index d6c39ea30f..0c20e3aa6e 100644
--- a/R/TODO
+++ b/R/TODO
@@ -1,3 +1,27 @@
+2.
+ (not fixed yet)
+
+=> Checking file-check results for R-4.4.3
+ERROR: ************************************************************
+ERROR: The following files are in the PLIST but not in /tmp/wip/R/work/.destdir/usr/pkg:
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/info/R-FAQ.info
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/info/R-admin.info
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/info/R-data.info
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/info/R-exts.info
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/info/R-intro.info
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/info/R-ints.info
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/info/R-lang.info
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/lib/R/doc/manual/R-FAQ.html
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/lib/R/doc/manual/R-admin.html
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/lib/R/doc/manual/R-data.html
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/lib/R/doc/manual/R-exts.html
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/lib/R/doc/manual/R-intro.html
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/lib/R/doc/manual/R-ints.html
+ERROR:         /tmp/wip/R/work/.destdir/usr/pkg/lib/R/doc/manual/R-lang.html
+*** Error code 1
+
+-- problem below has been fixed now --
+1.
 On NetBSD/amd64 9.3: I have Following configure problem:
 
 => Checking for portability problems in extracted files
diff --git a/R/distinfo b/R/distinfo
index 8c4fa35186..5df34d4112 100644
--- a/R/distinfo
+++ b/R/distinfo
@@ -3,8 +3,7 @@ $NetBSD: distinfo,v 1.111 2025/03/02 10:26:38 mef Exp $
 BLAKE2s (R-4.4.3.tar.gz) = c7860018ef691608dfa505c2bbeb7e015d03d106e8590587b49d1eac63449cda
 SHA512 (R-4.4.3.tar.gz) = 2a1d1e5ee2e18c928e2b3e58df372083b4bbd0822863a8441404999209035436e236c8ffe3970827fbf3d765157365800ebb0bb46f361c6abe473ddec30be06f
 Size (R-4.4.3.tar.gz) = 40234425 bytes
+SHA1 (patch-configure.ac) = 02086fc964b38a4bb3d8542a43e3c3ccd59864bb
 SHA1 (patch-m4_R.m4) = 3e1d390d8aa9895aee7cb479ddab371d82562b88
-SHA1 (patch-src_extra_xdr_xdr__mem.c) = 2e607b070db8b24a6ad5501e9c7c1549bf1b1d82
-SHA1 (patch-src_extra_xdr_xdr__stdio.c) = e4d8ace08ad282f44113941dd6a3b194769b8167
 SHA1 (patch-src_library_stats_src_Makefile.in) = 4eb93292858392792c37a706399e2cef91821bbe
 SHA1 (patch-src_main_character.c) = c1be2cae404ecbdd547343b70e9d072e9e1d5549
diff --git a/R/patches/patch-configure.ac b/R/patches/patch-configure.ac
new file mode 100644
index 0000000000..a6d2aafbaa
--- /dev/null
+++ b/R/patches/patch-configure.ac
@@ -0,0 +1,33 @@
+$NetBSD$
+
+on NetBSD/amd64 9.4: getting
+
+autoreconf: running: libtoolize --copy --force
+libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'tools'.
+libtoolize: copying file 'tools/ltmain.sh'
+libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
+ ...
+ ...
+loading site script './config.site'
+loading build-specific script './config.site'
+./configure: 4429: Syntax error: Word "blas" unexpected (expecting ")")
+*** Error code 2
+
+
+configure(s) generated are different on 10.99.12 and 9.4
+release    line # 
+--------   ------ 
+10.99.12   4770   withval=$with_blas; if test "${withval}" = no; then
+ 9.3       4392   withval=$with_blas; R_ARG_USE(blas)
+
+--- configure.ac	2026-01-02 17:46:48.409027336 +0900
++++ configure.ac	2026-01-02 17:46:48.409027336 +0900
+@@ -33,6 +33,8 @@
+ AC_INIT([R],[R_VERSION],[https://bugs.r-project.org],[R],[https://www.r-project.org])
+ AC_CONFIG_SRCDIR([src/include/Defn.h])
+ AC_CONFIG_AUX_DIR([tools])
++AC_CONFIG_MACRO_DIRS([m4])
++AC_CONFIG_MACRO_DIRS([m4])
+ 
+ ### * Information on the package.
+